#NEXUS [written Wed Aug 14 20:49:43 EDT 2019 by Mesquite version 3.6 (build 917) at kpughs-MacBook-Pro.local/192.168.2.7] BEGIN TAXA; TITLE Taxa; DIMENSIONS NTAX=50; TAXLABELS dummy Aotus Saimiri Cebus Pliobates Dionysopithecus Lomorupithecus Epipliopithecus Laccopithecus Pliopithecus Catopithecus Aegyptopithecus Saadanius Alesi Dendropithecus Simiolus Micropithecus Kalepithecus 'Limno_legetet' 'Limno_evansi' Rukwapithecus 'N_harrisoni' 'N_pickfordi' 'N_vancouveringorum' Rangwapithecus Turkanapithecus 'P_major' 'P_africanus' 'E_nyanzae' 'E_heseloni' Equatorius Morotopithecus Afropithecus Kenyapithecus Hylobatidae Pierolapithecus Hispanopithecus Oreopithecus Lufengpithecus Ouranopithecus Sivapithecus Pongo Pan Gorilla Victoriapithecus Presbytis Cercopithecus Macaca _RS_77_m3 Yuanmoupithecus ; END; BEGIN CHARACTERS; TITLE Character_Matrix; DIMENSIONS NCHAR=272; FORMAT DATATYPE = STANDARD RESPECTCASE GAP = - MISSING = ? SYMBOLS = " 0 1 2 3 4 5 6 7 8 9 A B C D E F G H J K"; CHARSTATELABELS 1 Inferior_transverse_torus, 2 Mandibular_condyle_height, 3 Superior_transverse_torus_position, 4 Mandibular_corpus_shape, 5 Dental_arcade_shape, 6 Palatine_process, 7 Alveolar_premaxilla, 8 Greater_palatine_foramen, 9 Greater_palatine_foramena, 10 Lesser_palatine_foramena, 11 Horizontal_palatine_process, 12 Palatine_crest, 13 Pyramidal_process_position, 14 Pterygoid_process, 15 'Incisive fossa (foramen?) position', 16 Incisive_fossa, 17 Incisive_canal_caliber, 18 Number_of_incisive_foramina, 19 Posterior_palate_depth_, 20 Maxillary_alveolar_process, 21 Alveolar_process_depth, 22 Maxilllary_sinus_presence, 23 Maxillary_sinus_position, 24 Maxillary_depth, 25 Lateral_malar_surface, 26 Frontozygomatic_breadth, 27 'Orbital breadth/ shape', 28 Nasal_shape, 29 Glabella, 30 Supraorbital_region, 31 Supratoral_sulcus, 32 Frontal_sinuses, 33 facial_profile, 34 Zygomatic_root_pneumatization, 35 'Inferior orbital foramen/nasal aperture', 36 Zygomatic_depth, 37 Zygomatic_orientation, 38 infraorbital_surface_of_maxilla, 39 Maxillary_nasal_process, 40 'Orbital/nasal distance (orbitale-rhinion)', 41 'Orbital/nasal surface', 42 Interobital_distance, 43 Inferior_orbital_border, 44 'Zygomatic arch/orbit', 45 Zygomatic_temporal_process, 46 Zygomatic_arch_angle, 47 Nasal_aperture_breadth, 48 Nasal_aperture_edges, 49 Lacrimal_fossa_visible, 50 Nasal_bone_length, 51 'Nasal aperture/malar surface', 52 Rostrum_length, 53 'Nasal apex/M2', 54 Nasoalveolar_clivus_length, 55 Maxillary_surface, 56 Canine_fossa, 57 'Zygomatico-alveolar crest', 58 Zygomatic_root_height, 59 Zygomatic_root, 60 Subnasal_floor, 61 Nasoalveolar_clivus_orientation, 62 Premaxilla_ascending_wing, 63 Orbit_inferior_margin, 64 Orbit_posiiton, 65 Pyriform_inferior_border, 66 Nasal_bridge, 67 Premaxilla_nasal_contact, 68 Atrioturbinal_ridge, 69 Infraorbital_foramen_present, 70 Position_of_the_frontozygomatic_suture, 71 ' Orbital convergence (relative to the sagittal plane)', 72 'Orbital frontation (relative to the Frankfurt plane)', 73 Frontal_trigon, 74 Length_of_the_frontal_in_temporal_fossa, 75 Temporal_fossa, 76 'Inion position relative to glabella (with the cranium oriented in the Frankfurt plane)', 77 External_occipital_protuberance, 78 Nuchal_plane_orientation, 79 Neurocranial_length, 80 Temporal_line, 81 Frontal_squama, 82 'Coronoal suture orientation/position of bregma', 83 Glenoid_fossa, 84 Articular_tubercle, 85 'Articular portion (postglenoid process) and tympanic portion of temporal bone', 86 Postglenoid_foramen, 87 Ectotympanic, 88 Orientation_of_the_ectoympanic_tube, 89 'I1 size (I1 MD/M1 MD?)', 90 I1_shape, 91 I2_size, 92 I2_cingulum, 93 Incisor_crown_waisting, 94 upper_canine_bilateral_compression, 95 P2, 96 Upper_premolar_cusp_heteromorphy, 97 Upper_premolar_cusp_volume, 98 P3_crown_shape, 99 P3_distal_margin, 100 P3_proporitions, 101 P3_transverse_crest, 102 P3_buccal_cingulum, 103 P3_protocone_lingual_face, 104 P3_buccal_face, 105 P3_lingual_cingulum, 106 P4_proportions, 107 P4_crown_shape, 108 P4_lingual_cingulum, 109 Molar_cusp_form, 110 M1_crown, 111 M1_outline_shape, 112 M2_crown, 113 M1_metacone_and_hypocone_size, 114 M2_cusp_at_mesiolingual_corner_of_crown, 115 'M1-M2 waisting', 116 'M1-M2 crown tapering', 117 'M1-M3 lingual cingulum', 118 'M2-M3 buccal cingulum', 119 'M1-M2 mesial shelf', 120 Bilophotdonty, 121 M3_distal_moiety, 122 Metacone_size, 123 Protocone_position, 124 Crista_obliqua, 125 Protoconule_size, 126 'Hypocone-metacone crista', 127 Hypocone_position, 128 Prehypocrista_position, 129 Trigon_size, 130 Talon_size, 131 'M1-M3 size sequence', 132 i1_shape, 133 i2_shape, 134 i2_lingual_cingulum, 135 lower_incisor_lingual_enamel, 136 i2_distal_margin, 137 p3_alignment, 138 p3_sectorality, 139 p3_mesiolingual_beak, 140 p3_metaconids, 141 p3_root_fusion, 142 p4_length, 143 p4_buccal_flare, 144 p4_mesial_fovea_height, 145 m1_crown_shape, 146 m1_crown_taperinig, 147 m2_crown_shape, 148 Pliopithecine_trangle, 149 Paracristid, 150 'Protoconid-metaconid', 151 'm1-m2 mesial lophid', 152 'm1-m2 paraconids', 153 'm1-m2 hypoconulids', 154 'm1-m2 crown outline', 155 'm1-m2 hypoconulid', 156 'm1-m3 cristid obliqua', 157 'm1-m3 buccal cingulum', 158 'm1-m3 lingual notch depth', 159 'm1-m3 mesial fovea', 160 'm1-m3 distal fovea', 161 m3_shape, 162 m3_hypoconulid_and_entoconid_linked_by_crest, 163 m3_hypoconid_and_entoconid_linked_by_crest, 164 'm3 relative entoconid-hypoconulid cusp area' / , 165 m3_mesial_transverse_crest_alignment, 166 m3_crown_shape, 167 m3_flare, 168 'm3/m2 size', 169 Lumbar_centra, 170 Vertebral_body_keeling, 171 Transverse_processes, 172 Transverse_process_inclination, 173 Accessory_processes, 174 Spinous_process_inclination, 175 Lumbar_centrum_hollowing, 176 Lumbar_centrum_spooling, 177 Lumbar_number, 178 Sacral_number, 179 Ischial_spine, 180 Acetabulum, 181 Sacrum_shape, 182 Scapula_shape, 183 Scapular_spine, 184 Glenoid_curvature, 185 Glenoid_orientation, 186 Scapula_position, 187 Sternum, 188 Humeral_head_orientation, 189 Dorsal_Epitrochlear_fossa, 190 Medial_epicondyle_orientation, 191 Medial_trochlear_keel, 192 Lateral_trochlear_keel, 193 Entepicondylar_foramen, 194 Olecranon_fossa, 195 Olecranon_fossa_articular_surface, 196 Trochelar_breadth, 197 Distal_humerus_anteroposterior_thickness, 198 Zona_conoidea, 199 Trochlear_proximal_border, 200 Humeral_shaft_curvature, 201 Deltoid_insertion, 202 humeral_head_shape, 203 Tuberosity_sizes, 204 Bicipital_groove, 205 Humeral_head_height, 206 'Humeral/ femoral head size', 207 'Ulnar olecrannon process size (% of sigmoid notch shape)', 208 Olecrannon_orientation, 209 Sigmoid_notch_shape, 210 Sigmoid_median_keel, 211 Ulnar_shaft_cross_section, 212 Ulnar_shaft_bowing, 213 Distal_ulna_shape, 214 'Styloid-triquetral articulation', 215 Distal_radioulnar_articulation, 216 Distal_ulnar_facet_on_radius, 217 Radial_notch_position, 218 Radial_notch_orientation, 219 Radial_head_outline, 220 Radial_head_lateral_lip, 221 Radial_notch_shape, 222 Radial_styloid_process, 223 Radial_lunate_articular_surface, 224 Dorsal_ridge_on_radius, 225 Distal_metacarpal_shape, 226 Tibial_condylar_facets, 227 Distal_fibula, 228 Femoral_head_shape, 229 Femoral_head_height, 230 Femoral_neck_tubercle, 231 Gluteal_tuberosity, 232 Femoral_condyles, 233 Patellar_groove, 234 Talar_proximal_tubercles, 235 Cotylar_fossa, 236 Talar_trochlear_wedging, 237 Talar_trochlear_rim_asymmetry, 238 Talar_head, 239 Fibular_facet_of_talus, 240 'Curve of medial trochlear margin (talus)', 241 Curve_of_talar_body, 242 Ectal_facet_curve, 243 Ectal_facet_shape, 244 Anterior_calcaneal_length, 245 Posterior_calcaneoastragular_joint, 246 Sustentacular_facet, 247 Calcaneocuboid_joint, 248 Heel_tubercle, 249 Metatarsal_II_lateral_facet, 250 'Entocuneiform-MT 1 facet', 251 Metacarpal_II_medial_facet, 252 MCI_proximal_articulation, 253 Metacarpal_dorsal_ridges, 254 'Trapezium-MCI joint', 255 Os_centrale, 256 Capitulum, 257 Hamate_distolateral_edge, 258 Scahpoid_beak, 259 Capitate_distal_surface, 260 Capitate_and_hamate_surface, 261 Hamate_hamulus, 262 Tail, 263 Body_size, 264 Arc_height_of_the_anterior_semicircular_canal_relative_to_its_arc_width, 265 Arc_height_of_the_lateral_semicircular_canal_relative_to_its_arc_width, 266 Arc_size_of_the_lateral_semicircular_canal_relative_to_the_sum_of_all_three_canal_arc_sizes, 267 Relative_semicircular_canal_size, 268 Olfactory_bulb_size_and_orientation, 269 Relative_ECV, 270 Advanced_I1_development, 271 'M1/M2 dev', 272 'M2/P4 development' ; MATRIX dummy ???????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????? Aotus 200421?10101?000001??12000110101111?00?0020?0000010100?0?00010111110101010?1??1110??010?210002000000000011010121100111000000103112410100-000?30121200101-021200-1-1?21?100000000000100000000010000000001010011200000000011000000020110201011000000100011?0?001000000001201110003 Saimiri 200201?10100?000001??0?0001001011?1?01?0020?0200000100?0?01000002110001010?0??1100??000?20000200000000?000000020100101000000103012400100-000?30131300001-020200-1-1?01?000000000000100000000010010010001001111100000000011010000020000200111000000000011000001000000000201111003 Cebus 001200?00101?000001??12000000100111?01?0020?0100010000?0?00001001110001010?11?0100??000?211002000000100010011020000111000000123101411100-000?30031300001-021200-1-1?10?000000000201200000000000000001001001111100000000011010000000010102011001000000001000001000000001200111102 Pliobates ????00?11????00?0?1???20001?1100?01?00?0000??1?0?101?0?0?010?1210?100?111???1?011?1?2210??????1?0??0????2111?1?1000000100?201000013????????????????????????????????????????????????????????00100200010000??1??020100101??01100100?0???????101?10????1?0?10??0?010???1?2?????1??? Dionysopithecus ???????????????????????????????????????????????0?????????????????????????????????????????0??11110????????11111111000002000001100112?0100?102010?2012100110010011100?011???????????????????????????????????????????????????????????????????????????????????????????????2????????? Lomorupithecus ????00????0???0??????12????1???0??1??0?000?????0?001?0?0?0001121011?1????????????????????????111001000012121101?00000010?100??3?01??????????????2010100130020012??????????????????????????????????????????????????????????????????????????????????????????????????????2????????? Epipliopithecus 20100?????0????????????000111100111?00?0000??100?00100?1?01?01210???1?011?????011???0?101100111100010100212100200000001001000000112000001102020020110001300000120011020?0000000020??1??00?0001000000100001101?20000000000000000002?010012111011010001110000001?00????02????????? Laccopithecus ????0???1?0???0???1????0?01?110?1?1??0?000????00?00100?0?01001210?1?1?1?1???????????????1110121111010100212100210000101000001000012001001100?10020100001210010120000020???????????????????????????????????????????????????????????????????????????????????????????????2????????? Pliopithecus ???2???????????????????????????????????????????????0?????01???????????0?????????????????????1?1???????????????2?????0??0?????0?????0010001020?00102210013200001200001202??????????????????????????????????????????????????????????????????????????????????????????????2????????? Catopithecus 20020?????0??????????????0?1000??????0???1???????100?????01?0001111?1?0?0?????11?????10??01002100023?1?0110100001100001000201?3?01300?00110200011010000001002101020?23?1????????????????????0100000100?10??????????????????????????0112??0001111100???????????????????0????????? Aegyptopithecus 001200?00?0??00?000??13101010000001?01?2010??110110000?000000000011000000000??10100?010??0000211001111?00120102000000010010010300110000001020300213000011004001110002102?????????????????0?001000001000100101?3000?0?0??01??0??0???01020200011111000?00?1???0??0??????2200000??? Saadanius ????0?????????0?001???41??0010010?0??1?2010??111100000?00010000001000?000??????01?0?0?20???0?21?????????????10201?0001?01100?03?011???????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????222000???? Alesi ????0????????0???0??????00????????1?00???00???00100??0???0?0?121??0?1??0?????????0????2001??0?1?????????????332310111130?020101022????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????2010011223 Dendropithecus 0?0200000?0???0??11??13??????????0???????????????????0???0101???0??0????????????????????10000010001100112101002100000020000012000111110003020210111001012004001010002111???????????0????????0100200100000??0??30101?????00010?00???0?????100111100000000???????0???0??2????????? Simiolus 0?0000?0????????001??????????????0???1?????????????1?????0??0100??????0?????????????????????0010002100?11101012300000120112012301200000003020100010001011204111110020211????????????????????0100200100000??????????????????????????011????00110?10??????????0??0??????2????????? Micropithecus 0?120001??????0?010??1200????????00??0????????????01?0???01011111??11?0?????????????????20000210002100002121011100000010012011301130010113020200112000011204100120022111??????????????????????????????????????????????????????????????????????????????????????????????2????????? Kalepithecus 1?02??????????0??????12????????????????????????????????????001??1??0????????????????????30000110000200112201112100000020?100003001?0010001020210213000012104001011012111????????????????????????????????????????????000?????????????????10001111000???????????????00??2????????? 'Limno_legetet' 1?02?????????????????1??????????????????????????????????????????????????1???????????????1000011100010100211101210000002000001230011101000101?201112001012004000010111111??????????????????????????????????????????????10??01?000???01?0???01111010?10000??????????????2????????? 'Limno_evansi' 0?020?????0??????????13?????????????????????????????????????01?10??0????????????????????20??0111000111?1111110200001002000001030011011000202?100112001011104001010012121?????????????????????????????????????????00???????00???????0101???011?10000???????????????????2????????? Rukwapithecus ?0?0????????????????????????????????????????????????????????????????????????????????????????????????????????2?2????????0?????????????????????0111100000121031110120022?2??????????????????????????????????????????????????????????????????????????????????????????????2????????? 'N_harrisoni' ??0???????????????????????????????????????????????????????????????????????????????????????????1?????????????33230112013000200010221??????202?001010001012204011112102?????????????????????????????????????????????????????????????????????????????????????????????????2????????? 'N_pickfordi' ??????????????????????????????????????????????0?????????????0???1???????????????????????011000122203111023203323111211301020102122011100???2?00101000?011?0411111210?22??????????????????????????????????0????????????????????????????????????????????????????????????2????????? 'N_vancouveringorum'2?12?????????????????????????????????????????????????????00???????????????????????????????????12220211??032023230001112010201010120??????????30101000101220411111?002221???????????????????0????????????01111?????????????????????????????????????????????????????????2????????? Rangwapithecus 2?0000?10?00??0?010??1????????????????????????10?????0?0?0101???1????????????????????????01?0011010111000220032210010020102000101200010012020100010001012004010010002222??????????????????????????????????????????????????00???????0110???00111010??100???????????????3????????? Turkanapithecus 20101????0???0?10??10??0000101001?0101?20001011011000100000???0000010?101?1????0100??????????111210210?0122022231101003010201020211????????2?????1000101210411111???21?1??????????????????????????????????????101011??1010110010???01111100?111101????????????????????3?????1??? 'P_major' 2?00?????????????????1?0????????????????????????????????????????0???????????????????????200?0111000100?02121012100000020110000100111100002020310212001011004000012012112????????????????????????21????????????????????????????????????????????????????????????????????4????????? 'P_africanus' 2?00???????????????????0??????????????????????????????????1?????????????????????????????100?0110002101102123012100000020000000100111100?020203102120010111041000200?221???????????????????????????????????????????????????????????????????????????????????????????????3????????? 'E_nyanzae' 2?11100000000000?00?01?0???1?????0???1??01????00?1000000?01001?0000?0???????????????????200001100001001121011122000000201120023001100?000202030021200101200400001000211100000000??0?1???????????211?110???????????????????????????00101010002110010?0001?0?1??010?0?0?3????????? 'E_heseloni' 0012100000000??00?0?01?00011010010000101010001000100000000100100000100001000000110000220200001110001001121031121000001100000003001100?000202031021100101200400011000211100000000????1000001011012111110101?0???200111000011100100?0???0010001110001010010001000101000131220?1021 Equatorius 0?10???????????????01??0?????????1???????????????????????01?????????????????????????????20000112110110122112122300001110110010300110010001120300112001012104200110002112?0???????????01???10?10?21111?11011001121?11000001??0?110?00100?2000111????????1?11?100?11?1??3????????? Morotopithecus ????11010?1?010001010141???0???00????10201????1??1?0?0?01010010010010???????????????????2100?211100101?210111223100000200100021?011?????0??2????21?0010110041011????????21121111???????1???????????????????????????????????????????010??2?????????????????????????????3????????? Afropithecus 0?0?1?0?0000000??0010141000100000?0101?2?000?00011000101001?01001001001000?????000??????310002111100000200?0112200011?101120??1?1100010001020300?12001011104100110012212????????????????????????21???1??????????1?0?????????????0?0??????0001?111?0???0???11000???00??0????????? Kenyapithecus 0??????????????????01140???????????????????????????????1?11?????????????????????????????210001110????????213122300112110?020001001??????0112?31021?00?0110041000?????1???????????????????????011?111111???????????????????????????????????????????????????????????????3????????? Hylobatidae 01121001100000000011012000110101101000001001011000010000001011212001101110001001110002211110001000030012230112231000111010000030113111001202110111200101200421011202212121111111531011111101120221111110020211001110111001220010110011002101001110010001?01?02011011012122111112 Pierolapithecus ????1?1???????1???1???41?1011101110??1?1010???11111001?0?10?01002?00??111???????????????11??021100?2?0??221?1222?001??1001200210023?????????????????????????????????????1122?111?????????1?????????????????????????????????????00?????????????????????????1?000?1??10?3????????? Hispanopithecus ?1??1?????????1??????121??011?0111??11??01???????1?0???1?111??00?????11110?0???0??1?0?20110?02100002001222131223000111101120021002011101011202102120010120041001100021112112?1114?????1??1??1???21???11?1????????1???????1?????00???11????????????????????1?000?1???0?30200????? Oreopithecus 00001??????????21??10???001?1100011?0???00?0100000?10100100?1?00??0??0110?????????100???1100001222120010012033231011013010200011210111000102010101000?001102110?12002212201?21??46??1?11?1?112022111111012?21102111????0?0220?1?1??01??12?11310??002100??01?0?0??0??1130100?1??? Lufengpithecus ??????1????????????11???01110?0???101?1200000001101?0101?1??0????????1??0??????00????????100021???????????????2????????0??????????0001010112?31021200?0120042001100?2121??????????????????????????????????????????????????????????????????????????????????????????????3????????? Ouranopithecus ?1??111???????121?101??10120120?1?1?01?1110?01111110?100101101002?0???111??????01???????111102110002001222131222?01021001?20?010022???000012031021200?012004100110002121??????????????????????????????????????????????????????????????????????????????????????????????4??????0?? Sivapithecus 0?1011011?1001112?1011411000000110001110121000020220021101120?0020000111??0????10?000???31010111000210122213122200002100102000100221110?0112031021200?012004200010002111??????????00???????01102211110110??0????????????????????1??0???12??????????1100????????11?110?3????????? Pongo 01121101101010112110114111000001111011100211000201201211011201002001011100011101000002202101011210031012221312231000210010100010112111000112031021300101200410001000211121222111641011111111120221111110120211011110111101220110100011012000111110020000001100011011014011012020 Pan 01101110121111221112110100201210111001100101021110100211111111002001001111111210201122203111011101020012221312221011111010201030122111000112030021200101200420001201212121222111651011111101120221111110120211021110111101120111100011012000111110021000001110111011113011012021 Gorilla 01101110111111221112110101201210110001110101021111100101111111002001001111111210201122201111001100020012121102231011111010200030123011000112030111200101200401001000212121222111751011111111110221111110120211001110111001120111100011012000011110021010101110111011114022012021 Victoriapithecus 00?220?11?00?000000??0?101000011001?01?0120?0101010000?0?010010001?1000000001?10200?0?20?000011100031002220312231011110101012121-121110003000100212001111?1?2011102022?2??????????02?????0?000102110200200100?32000?000?100?2???0?110?0?01??1000?1?0?1?0?1?000?0?1????2221000??? Presbytis 001420?11000?000001??0?001101111101?01?1110?0101000100?0?10001010121100110?01?0111??22201000001000030012220303231011010211022200-02110000301020111200111-?2?21001?2021?1100000000002000000000010211020010?100010000100001000110000110100000130000012?1110110000001000021211110?? Cercopithecus 001220?01200?000001??0?101100111101?01?2120?0100010000?0?01001000121101110?01?1010??02202100001120030013231303231011010200022200-03110101302000001100111-?2?20111?2?21?11000000010020000000000102110200100010032001100001001200001110000010030000111?1110100000001000021221110?? Macaca 001220?01100?000001??14101100111101?01?2120?0101010000?0?01001000121001110001?10200?11202010001100030012232323231011010211022200-0?110101302020001100111-?2?20111?2022?11000000000020000000010102111200200110030000000001000200001110000011030000110111101000000010000212211?041 _RS_77_m3 ????????????????????????????????????????????????????????????????????????????????????????????????????????????1??????????????????????????????????????00??????410011002211???????????????????????????????????????????????????????????????????????????????????????????????2????????? Yuanmoupithecus ????????????????????????????????????????????????????????????????????????????????????????????????????????????1???????01?0?0?0?????????????202110?111001012104100110012112??????????????????????????????????????????????????????????????????????????????????????????????2????????? ; END; BEGIN ASSUMPTIONS; TYPESET * UNTITLED = unord: 5 17 60 65 78 97 99 103 109 111 127 131 141 153 160 180 254 267- 272, ord: 1- 4 6- 16 18- 59 61- 64 66- 77 79- 96 98 100- 102 104- 108 110 112- 126 128- 130 132- 140 142- 152 154- 159 161- 179 181- 253 255- 266; END; BEGIN MESQUITECHARMODELS; ProbModelSet * UNTITLED = 'Mk1 (est.)': 1- 272; END; Begin MESQUITE; MESQUITESCRIPTVERSION 2; TITLE AUTO; tell ProjectCoordinator; timeSaved 1565830184053; getEmployee #mesquite.minimal.ManageTaxa.ManageTaxa; tell It; setID 0 6030766692839858380; endTell; getEmployee #mesquite.charMatrices.ManageCharacters.ManageCharacters; tell It; setID 0 3091255924505665960; tell It; setDefaultOrder 0 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100 101 102 103 104 105 106 107 108 109 110 111 112 113 114 115 116 117 118 119 120 121 122 123 124 125 126 127 128 129 130 131 132 133 134 135 136 137 138 139 140 141 142 143 144 145 147 148 149 150 151 152 153 154 155 168 157 158 159 164 163 164 165 275 173 167 168 171 178 179 180 181 182 183 184 185 186 187 188 189 190 191 192 193 194 195 196 197 198 199 200 201 202 203 204 205 206 207 208 209 210 211 212 213 214 215 216 217 218 219 220 221 222 223 224 225 226 227 228 229 230 231 232 233 234 235 236 237 238 239 240 241 242 243 244 245 246 247 248 249 250 251 252 253 254 255 256 257 258 259 260 261 262 263 264 265 270 271 272 273 274 278 280 279 282 283 266 267 268 283 284 285; attachments ; endTell; mqVersion 360; checksumv 0 3 3006017752 null getNumChars 272 numChars 272 getNumTaxa 50 numTaxa 50 short true bits 255 states 255 sumSquaresStatesOnly 81400.0 sumSquares 81400.0 longCompressibleToShort false usingShortMatrix true NumFiles 1 NumMatrices 1; mqVersion; endTell; getWindow; tell It; suppress; setResourcesState false false 237; setPopoutState 300; setExplanationSize 0; setAnnotationSize 0; setFontIncAnnot 0; setFontIncExp 0; setSize 1265 932; setLocation -1744 25; setFont SanSerif; setFontSize 10; getToolPalette; tell It; endTell; desuppress; endTell; getEmployee #mesquite.trees.BasicTreeWindowCoord.BasicTreeWindowCoord; tell It; makeTreeWindow #6030766692839858380 #mesquite.trees.BasicTreeWindowMaker.BasicTreeWindowMaker; tell It; suppressEPCResponse; setTreeSource #mesquite.trees.ManyTreesFromFile.ManyTreesFromFile; setAssignedID 984.1466605680531.8757160529977718885; getTreeWindow; tell It; setExplanationSize 30; setAnnotationSize 20; setFontIncAnnot 0; setFontIncExp 0; setSize 1028 860; setLocation -1744 25; setFont SanSerif; setFontSize 10; getToolPalette; tell It; endTell; getTreeDrawCoordinator #mesquite.trees.BasicTreeDrawCoordinator.BasicTreeDrawCoordinator; tell It; suppress; setTreeDrawer #mesquite.trees.SquareTree.SquareTree; tell It; setNodeLocs #mesquite.trees.NodeLocsStandard.NodeLocsStandard; tell It; branchLengthsToggle off; toggleScale on; toggleBroadScale off; toggleCenter on; toggleEven on; setFixedTaxonDistance 0; endTell; setEdgeWidth 6; orientUp; setCornerMode Right_Angle 50; endTell; setBackground White; setBranchColor Black; showNodeNumbers off; showBranchColors on; labelBranchLengths off; centerBrLenLabels on; showBrLensUnspecified on; showBrLenLabelsOnTerminals on; setBrLenLabelColor 0 0 255; setNumBrLenDecimals 6; setSelectedTaxonHighlightMode 1; desuppress; getEmployee #mesquite.trees.BasicDrawTaxonNames.BasicDrawTaxonNames; tell It; setColor Black; setTaxonNameStyler #mesquite.trees.ColorTaxonByAssigned.ColorTaxonByAssigned; toggleShadePartition off; toggleShowFootnotes on; toggleNodeLabels on; toggleCenterNodeNames off; toggleShowNames on; namesAngle ?; endTell; endTell; setTreeNumber 1; setTree '(2,((3,4),(((((5,6),(7,((8,9),10))),((((13,(45,(46,(47,48)))),((((((((((14,(22,23)),24),(21,38)),26),25),33),32),((((34,(41,42)),((36,37),39)),(40,(43,44))),35)),31),((18,((27,28),29)),30))),(16,17)),((15,19),20))),12),11)));'; setDrawingSizeMode 0; toggleLegendFloat on; scale 0; toggleTextOnTree off; togglePrintName off; showWindow; newAssistant #mesquite.ancstates.TraceCharacterHistory.TraceCharacterHistory; tell It; suspend ; setDisplayMode #mesquite.ancstates.ShadeStatesOnTree.ShadeStatesOnTree; tell It; toggleLabels off; togglePredictions off; toggleGray off; endTell; setHistorySource #mesquite.ancstates.RecAncestralStates.RecAncestralStates; tell It; getCharacterSource #mesquite.charMatrices.CharSrcCoordObed.CharSrcCoordObed; tell It; setCharacterSource #mesquite.charMatrices.StoredCharacters.StoredCharacters; tell It; setDataSet #3091255924505665960; endTell; endTell; setMethod #mesquite.parsimony.ParsAncestralStates.ParsAncestralStates; tell It; setModelSource #mesquite.parsimony.CurrentParsModels.CurrentParsModels; toggleMPRsMode off; endTell; toggleShowSelectedOnly off; endTell; setCharacter 40; setMapping 1; toggleShowLegend on; setColorMode 0; toggleWeights on; setInitialOffsetX 0; setInitialOffsetY -258; setLegendWidth 142; setLegendHeight 129; resume ; endTell; endTell; desuppressEPCResponse; getEmployee #mesquite.trees.ColorBranches.ColorBranches; tell It; setColor Red; removeColor off; endTell; getEmployee #mesquite.ornamental.BranchNotes.BranchNotes; tell It; setAlwaysOn off; endTell; getEmployee #mesquite.ornamental.ColorTreeByPartition.ColorTreeByPartition; tell It; colorByPartition off; endTell; getEmployee #mesquite.ornamental.DrawTreeAssocDoubles.DrawTreeAssocDoubles; tell It; setOn on; toggleShow posteriorProbability; toggleShow bootstrapFrequency; toggleShow consensusFrequency; toggleShow posteriorProbability; toggleShow bootstrapFrequency; setDigits 4; setThreshold ?; writeAsPercentage off; toggleCentred off; toggleHorizontal on; toggleWhiteEdges on; toggleShowOnTerminals on; setFontSize 10; setOffset 0 0; endTell; getEmployee #mesquite.ornamental.DrawTreeAssocStrings.DrawTreeAssocStrings; tell It; setOn on; toggleCentred on; toggleHorizontal on; setFontSize 10; setOffset 0 0; toggleShowOnTerminals on; endTell; getEmployee #mesquite.trees.TreeInfoValues.TreeInfoValues; tell It; panelOpen false; endTell; endTell; endTell; getEmployee #mesquite.charMatrices.BasicDataWindowCoord.BasicDataWindowCoord; tell It; showDataWindow #3091255924505665960 #mesquite.charMatrices.BasicDataWindowMaker.BasicDataWindowMaker; tell It; getWindow; tell It; getTable; tell It; columnWidth 267 21; endTell; setExplanationSize 30; setAnnotationSize 20; setFontIncAnnot 0; setFontIncExp 0; setSize 1028 860; setLocation -1744 25; setFont SanSerif; setFontSize 10; getToolPalette; tell It; setTool mesquite.charMatrices.BasicDataWindowMaker.BasicDataWindow.ibeam; endTell; setActive; setTool mesquite.charMatrices.BasicDataWindowMaker.BasicDataWindow.ibeam; colorCells #mesquite.charMatrices.NoColor.NoColor; colorRowNames #mesquite.charMatrices.TaxonGroupColor.TaxonGroupColor; colorColumnNames #mesquite.charMatrices.CharGroupColor.CharGroupColor; colorText #mesquite.charMatrices.NoColor.NoColor; setBackground White; toggleShowNames on; toggleShowTaxonNames on; toggleTight off; toggleThinRows off; toggleShowChanges on; toggleSeparateLines off; toggleShowStates on; toggleAutoWCharNames on; toggleAutoTaxonNames off; toggleShowDefaultCharNames off; toggleConstrainCW on; toggleBirdsEye off; toggleShowPaleGrid off; toggleShowPaleCellColors off; toggleShowPaleExcluded off; togglePaleInapplicable on; togglePaleMissing off; toggleShowBoldCellText off; toggleAllowAutosize on; toggleColorsPanel off; toggleDiagonal on; setDiagonalHeight 80; toggleLinkedScrolling on; toggleScrollLinkedTables off; endTell; showWindow; getWindow; tell It; forceAutosize; endTell; getEmployee #mesquite.charMatrices.AlterData.AlterData; tell It; toggleBySubmenus off; endTell; getEmployee #mesquite.charMatrices.ColorByState.ColorByState; tell It; setStateLimit 9; toggleUniformMaximum on; endTell; getEmployee #mesquite.charMatrices.ColorCells.ColorCells; tell It; setColor Red; removeColor off; endTell; getEmployee #mesquite.categ.StateNamesEditor.StateNamesEditor; tell It; makeWindow; tell It; setExplanationSize 30; setAnnotationSize 20; setFontIncAnnot 0; setFontIncExp 0; setSize 1028 860; setLocation -1744 25; setFont SanSerif; setFontSize 10; getToolPalette; tell It; setTool mesquite.categ.StateNamesEditor.StateNamesWindow.ibeam; endTell; rowsAreCharacters on; toggleConstrainChar on; toggleConstrainCharNum 3; togglePanel off; toggleSummaryPanel off; endTell; showWindow; endTell; getEmployee #mesquite.categ.StateNamesStrip.StateNamesStrip; tell It; showStrip off; endTell; getEmployee #mesquite.charMatrices.AnnotPanel.AnnotPanel; tell It; togglePanel off; endTell; getEmployee #mesquite.charMatrices.CharReferenceStrip.CharReferenceStrip; tell It; showStrip off; endTell; getEmployee #mesquite.charMatrices.QuickKeySelector.QuickKeySelector; tell It; autotabOff; endTell; getEmployee #mesquite.charMatrices.SelSummaryStrip.SelSummaryStrip; tell It; showStrip off; endTell; getEmployee #mesquite.categ.SmallStateNamesEditor.SmallStateNamesEditor; tell It; panelOpen true; endTell; endTell; endTell; getEmployee #mesquite.charMatrices.ManageCharacters.ManageCharacters; tell It; showCharacters #3091255924505665960 #mesquite.lists.CharacterList.CharacterList; tell It; setData 0; getWindow; tell It; useTargetValue off; setTargetValue ; newAssistant #mesquite.lists.DefaultCharOrder.DefaultCharOrder; newAssistant #mesquite.lists.CharListInclusion.CharListInclusion; newAssistant #mesquite.lists.CharListPartition.CharListPartition; newAssistant #mesquite.parsimony.CharListParsModels.CharListParsModels; setExplanationSize 30; setAnnotationSize 20; setFontIncAnnot 0; setFontIncExp 0; setSize 1028 860; setLocation -1744 25; setFont SanSerif; setFontSize 10; getToolPalette; tell It; setTool mesquite.lists.CharacterList.CharacterListWindow.ibeam; endTell; endTell; showWindow; getEmployee #mesquite.lists.CharListAnnotPanel.CharListAnnotPanel; tell It; togglePanel off; endTell; endTell; endTell; endTell; end;