#NEXUS [written Tue Jun 05 12:10:10 CEST 2018 by Mesquite version 3.2 (build 801) at Carlos/10.196.49.226] BEGIN TAXA; TITLE Taxa; DIMENSIONS NTAX=50; TAXLABELS Ancestor Captorhinidae Araeoscelidia Claudiosaurus Youngina Rhynchosauria Trilophosaurus Prolacertiformes Choristodera Archosauriformes Kuehneosauridae Rhynchocephalia Squamata Corosaurus Cymatosaurus Augustasaurus Pistosaurus Plesiosaurus Simosaurus Paludidraco Germanosaurus Nothosaurus Lariosaurus Wumengosaurus SerpianoNeustico AnaroDactylo Keichousaurus Dianopachysaurus Hovasaurus Eusaurosphargis Thalattosauria Yunguisaurus Diandongosaurus Psephoderma Cyamodus Placodus Paraplacodus Sinosaurosphargis Palatodonta Testudines Helveticosaurus Odontochelys Hanosaurus Ichthyopterygia Dawazisaurus Qianxisaurus Majiashanosaurus Lpolycarpon Lqianensis Bobosaurus ; END; BEGIN CHARACTERS; TITLE Character_Matrix; DIMENSIONS NCHAR=144; FORMAT DATATYPE = STANDARD GAP = - MISSING = ? SYMBOLS = " 0 1 2 3 4"; MATRIX Ancestor 000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 Captorhinidae 0000000000000000?000000{0 2}010000000000000000000?0000001000000000000?0000000000000000?0000000000?000000?0?01000000000000000000000000000000000000000 Araeoscelidia 110000000000000101000000000030{0 1}00000000?000001000000010100000001000000000000100000?0000000100000000100?010001100000000000000000000000000000{0 1}0000 Claudiosaurus 010000000010000101000000111030200001000?00000?00000201010?00000000100?000000100000?0010001?00110000100?10000010111100000000110111000000000100000 Youngina 110000000010000101000000000030100000110?000001000000010?100100010010000000001000000000000?100?10000100?1000?1100?000?000000110101000000100000000 Rhynchosauria 1000110000100000010101331110101100001101001000001000010010010001?01011000000100000?0{0 1}00000?00110000100?100{0 1}0110000010000000110101010101110030000 Trilophosaurus 11001?0000?00100110?003311?0100?000?11000?120?000000010?10010001?01011{1 2}?0000100000?001000??0?110000100?100001100?0010000000110101000101110030000 Prolacertiformes 110011010010000{0 1}010{0 1}0{0 1}0{2 3}11{0 1}0302100{0 1}1110?0010010000000101{0 1}00100000010{0 1}1{0 2}0000010{0 1}000?{0 1}0100011001100000?0?1000011000001{1 2}00000{0 1}110101000{0 1}{0 1}11{0 1}00{0 3}0000 Choristodera 1200110100100000010000131110101100{0 1}0110?0111010?100001010001000000100110000010000011010100?0?110001100?10000110000{0 2}120000001101110?01011100{0 3}0000 Archosauriformes {0 1}{0 1}001101001000{0 1}{0 1}{0 1 2}1010{0 1}{0 2}{0 3 4}11{0 1}030110000110?0{0 1}{0 1}{0 1 2}010{0 1}{0 1}000{0 1}101{0 1}001000{0 1 2}0010{0 1}1{0 1 2}0000010{0 1}0100{0 1}{0 1}10{0 2}0{0 1}100110000100?100{0 1}011000{0 1}010000000110{1 2}{0 1}10001{0 1}11110{0 3}0000 Kuehneosauridae 100000000010000101000002111010210011111?01000100?000?10?00010000001011000000101010?11?0001?0?????????1?100001?0000212000001110101??0?????00{0 1}0000 Rhynchocephalia 1000000000{1 2}000{0 1}{0 1}01{0 1}10{0 1}{0 2}{0 2}11{0 1}010{1 2}0000111{0 1}10{0 1}{0 1}00100000001011001010{0 1}00101{0 1}0001001000000{0 1}000001100110000100?100001100002000000011101010100{0 1}1110010000 Squamata 1{0 1 2}00000000{1 2}00{0 1}{0 1}001{0 1}00{0 1}{0 2}{0 2 3 4}11{0 1}01021001?11110{0 1}0{0 1 2}{0 1}{0 1}00{0 1}00001011001010{0 1}001011{0 2}00{0 1}0010000001{0 1}0000110?1{0 1}00001{0 1}0?10000110000{0 2}10{0 1}00001110101010011111{0 1}{0 1 2 3}0?00 Corosaurus 001010100020000111?000101110102001??1001011101?1?00000??1111000011011100010010100111110101001110111111110111001111002011011110111110011??0000?00 Cymatosaurus 0211101022200{0 1}01{1 2}1100{1 2}{2 3}011102120011?100?0{0 1}110??1100000110?2?00001101111001????100111??0??00001??????????0???0?000000?0??011110111????????003000? Augustasaurus 0020102?2220100121001033111022201?1?100012112111110000??01210000010211101?0111110111?10???00?10?011??10?03?10?121131211??????????????????0030000 Pistosaurus 002010202220100121?01133111022201?1?10011211???1?00000???????000110111101100?1?0011??10???00?1???????11103??0?1?11312110????11???????????0030?0? Plesiosaurus 0000100?{1 2}22000000100103311102220101?100112112111110200??010100000011111010011011011101010000?101011??101041101{0 1}110312?04?111012110?0010000030000 Simosaurus 020010001220001{0 1}{0 1}100021111102020000110000{0 1}210121000200110101000010121110010010100011110100001101111111010211001011112012101111211111011000030011 Paludidraco 02001??0??20001?11000?101110202000??100?01211?21?0020011?101010210121100011????00011??1?000??10111???10102?1??1011?????1????112??????????0030111 Germanosaurus 02111010022100011120?111111120200???100?00?????1?00??????????0001111????0?????????????????00?1??????????0????????????0???????????????????0030??? Nothosaurus 021110100{0 2}2100110{1 2}{1 2}002{2 3}21111202000{0 1}11000012{0 1}1121100{0 2}0011012100001102111101{0 1}01010001101{0 1}11{0 1}0011{0 1}1111{0 1}21010211001{0 1}{0 1}1{0 1}02012101111211111011000030100 Lariosaurus 021110100{0 2}21001102{1 2}002211111{1 2}02000??100001201??1?00100??01210000110211110?10101000?101{0 1}210000101111??10102110011111020{0 1}3{0 1}11111211011011000030100 Wumengosaurus 0120101000?0000??1???0001110312?0???11??0??0????????????0??100020010?10?0?00?0?000???11110?0?1??11???1?10???0011?10010100?1?1??11211011000130?00 SerpianoNeustico 110010000{0 2}2000{0 1}10{1 2}000000111030200001110100201??1000210??0001100000101101011010100011011{1 2}10000101011{0 1}2101021100101{0 1}{0 1}0{1 2}0{1 2}3{0 1}{0 1}1111211211011000130000 AnaroDactylo 1100100000200001010000001110302000??110100201??1000210??0001100000101101011010100011010110000101111??10102110?10100010130011?1?????0?????013{0 1}000 Keichousaurus 1000100012200011010{0 1}0203110030210001100?002011?10002?0?010011000{0 1}000110101101?100011011{0 1}10000101111121010211001{0 1}{0 1}1111002001111211110011000030000 Dianopachysaurus 120010000020001111000200111030200?0?100?00?0????????????00?1?0000000??????10????0????11110???10??1???101????00111110200201??112112100110001?0?00 Hovasaurus ?1???????????00101000000??0030200???100?00020100?0???1?????1?00????00000000010000000000000100010000100?1000011000020200000011010100100?10?0?0000 Eusaurosphargis ?10010???????????????003???030??0????????0????????????????0??0000010?1110?0?????10?1?10????011100?0??0??001?0?0??0?100?001??11211????????1??0?0? Thalattosauria 1{0 1}2010{1 2}0{0 1}220000{0 1}?10{0 1}000{0 3}?1004021001?110?0011??00100{0 2}01??110{0 1}000{0 1}{0 1}010{0 1}?000?001???00?1?10000000110000100?10000000111?{0 1}2000000111111{0 1}?10{0 1}1000030000 Yunguisaurus 001?1020122000?0{1 2}1?0??33????2220??1?20?????1??2??1?20000102100001??1110101010?110?11?10100????????1??111?3??011111312124?11?01?1?0100??000030000 Diandongosaurus 01101010022001111100011011103120000111010??11??1100000?000111000110011?00100101000110101100001111110210?0211001111?1102?011111111210011000130002 Psephoderma 022110201221000?01000203111020010000110?00100??1001110???????011?0101?00??001???10?10101000101???1???0??01?10010102100?10111101111?1011002020000 Cyamodus 021110100{0 1}20000{0 1}01001203111020010000010000110{0 1}011011100?1021001100101?000000101?10010101000101?0011?20???0?10?1110??201101110??11????????2020000 Placodus 02111011002001{0 1}101001{0 2}00111020010011110100100111101100001021001110101000000010111001110100010110011110?10011001110012021001110111210011001020000 Paraplacodus 001?102?0?20?1???1000???111010210?11100?0??0???1?01??0??11211011101011000?00???11001?10100?101100?0??1??011?001010?121{0 1}3011?101111?10????0110?00 Sinosaurosphargis 0110102000?0?001?000120311004?20001?0?0???11???0?0020??10?10?00000101?000?000???11?1??2010?01110110121??001?0?1211??100??????????????????2131000 Palatodonta 0?1?10?00120?0?101000?001110?0210?11110?0??0??????1?????1??1?00010101?????????????????????????????????????????????????????????????????????110?0? Testudines 0{0 2}00000000100{0 1}00??00000311{0 1}0000100001100000{0 2}000{0 1}{0 1}0001101000{0 1}0?00????0{0 1}{0 2}0000010{0 1}0000100000000?100000100??001000000{0 1}{0 2}1000{1 2}0010000110100{0 1}111303?00? Helveticosaurus ?000100?????00???1?????????01??????????????0????????????1??1?0000010??000?00?0?010?1?10???010110000100?10010000111?11021010?012112?1?11000??0?00 Odontochelys 1200000000?0??????????04???00???0???????0??0??00?000??????00??0?00100100000010100001??00000???0???0??2??0110000000??0100?00?1001?01000?1?30?0?0? Hanosaurus 0000???1002000110?00010311103?2000????0?00?11????????????????00???10??010??????0???1??1????011100???????02??00??????????010?11211111011000??00?0 Ichthyopterygia 0120102100{0 1}00{0 1}00{0 1 2}{1 2}0000{0 1 3}{0 3}1100{1 3}0210001110?0001{0 1 2}10?{0 1}002?000001{0 1}?0{0 1}20010110100001?0???01?00???0??111000{0 1}0??102?00{0 1}011131{1 2}004??{0 1}?01211??0?{0 1}??10{0 1}30000 Dawazisaurus 1200100000?0000011000200111031200???0?0?00?10???????????00?100000100?1???110?0?000??011210??????11???10?0???1?10111100011011110001110110001?0000 Qianxisaurus 111010200020000101000000111030210001110?00201??1????????00?100?00010?1010?10?01000?101021000011?11???1010111001?11301023011?0??112110110000?0000 Majiashanosaurus ??????????????????????????????????????????????????????????????????????000??0101000?1?11110010111111021010011001111102003011??????{1 2}??0?1000?????0 Lpolycarpon 011010200020000111001?0311003020001?000?00?1????????????0??100000010?1???100??1011?1002110?0111?01???11?0???001??12111010???001110110110011?1?00 Lqianensis 01101020002000011100100311003020001?000100?1???0?0?201?10011?0010010110001000?1011?100201000111?11012111001?001211011101011?0011?010011001101?00 Bobosaurus ??2??????????????????????????????????????????????????????????00??????1001000101?0?11?10?00?00???????????????0?1{1 2}?0?1????011????????00????0????2? ; END; BEGIN TREES; Title 'Trees from "paludianexus.nex"'; ID 0161be3c1c6c1; LINK Taxa = Taxa; TRANSLATE [0] 1 Ancestor, [1] 2 Captorhinidae, [2] 3 Araeoscelidia, [3] 4 Claudiosaurus, [4] 5 Youngina, [5] 6 Rhynchosauria, [6] 7 Trilophosaurus, [7] 8 Prolacertiformes, [8] 9 Choristodera, [9] 10 Archosauriformes, [10] 11 Kuehneosauridae, [11] 12 Rhynchocephalia, [12] 13 Squamata, [13] 14 Corosaurus, [14] 15 Cymatosaurus, [15] 16 Augustasaurus, [16] 17 Pistosaurus, [17] 18 Plesiosaurus, [18] 19 Simosaurus, [19] 20 Paludidraco, [20] 21 Germanosaurus, [21] 22 Nothosaurus, [22] 23 Lariosaurus, [23] 24 Wumengosaurus, [24] 25 SerpianoNeustico, [25] 26 AnaroDactylo, [26] 27 Keichousaurus, [27] 28 Dianopachysaurus, [28] 29 Hovasaurus, [29] 30 Eusaurosphargis, [30] 31 Thalattosauria, [31] 32 Yunguisaurus, [32] 33 Diandongosaurus, [33] 34 Psephoderma, [34] 35 Cyamodus, [35] 36 Placodus, [36] 37 Paraplacodus, [37] 38 Sinosaurosphargis, [38] 39 Palatodonta, [39] 40 Testudines, [40] 41 Helveticosaurus, [41] 42 Odontochelys, [42] 43 Hanosaurus, [43] 44 Ichthyopterygia, [44] 45 Dawazisaurus, [45] 46 Qianxisaurus, [46] 47 Majiashanosaurus, [47] 48 Lpolycarpon, [48] 49 Lqianensis, [49] 50 Bobosaurus; TREE tnt_1 = (1,(2,(3,((4,((((8,(9,(10,(6,7)))),(11,(12,13))),(44,(31,(41,((((24,(33,(14,(15,(17,(32,(16,(18,50)))))))),(46,((47,(28,(45,(27,((19,20),(21,(22,23))))))),(25,26)))),(39,(37,(36,(34,35))))),(38,48,49)),(30,43))))),(40,42))),(5,29))))); END; BEGIN ASSUMPTIONS; TYPESET * UNTITLED = unord: 1 - 144; END; BEGIN MESQUITECHARMODELS; ProbModelSet * UNTITLED = 'Mk1 (est.)': 1 - 144; END; Begin MESQUITE; MESQUITESCRIPTVERSION 2; TITLE AUTO; tell ProjectCoordinator; timeSaved 1528193410617; getEmployee #mesquite.minimal.ManageTaxa.ManageTaxa; tell It; setID 0 9061593487631284141; endTell; getEmployee #mesquite.charMatrices.ManageCharacters.ManageCharacters; tell It; setID 0 8271735216688951351; mqVersion 320; checksumv 0 3 1509921819 null getNumChars 144 numChars 144 getNumTaxa 50 numTaxa 50 short true bits 2305843009213693983 states 31 sumSquaresStatesOnly 27526.0 sumSquares -7.701515650773738E20 longCompressibleToShort false usingShortMatrix true NumFiles 1 NumMatrices 1; mqVersion; endTell; getWindow; tell It; suppress; setResourcesState false false 100; setPopoutState 300; setExplanationSize 0; setAnnotationSize 0; setFontIncAnnot 0; setFontIncExp 0; setSize 1366 649; setLocation -8 -8; setFont SanSerif; setFontSize 10; getToolPalette; tell It; endTell; desuppress; endTell; getEmployee #mesquite.charMatrices.BasicDataWindowCoord.BasicDataWindowCoord; tell It; showDataWindow #8271735216688951351 #mesquite.charMatrices.BasicDataWindowMaker.BasicDataWindowMaker; tell It; getWindow; tell It; setExplanationSize 30; setAnnotationSize 20; setFontIncAnnot 0; setFontIncExp 0; setSize 1266 577; setLocation -8 -8; setFont SanSerif; setFontSize 10; getToolPalette; tell It; setTool mesquite.charMatrices.BasicDataWindowMaker.BasicDataWindow.ibeam; endTell; setActive; setTool mesquite.charMatrices.BasicDataWindowMaker.BasicDataWindow.ibeam; colorCells #mesquite.charMatrices.NoColor.NoColor; colorRowNames #mesquite.charMatrices.TaxonGroupColor.TaxonGroupColor; colorColumnNames #mesquite.charMatrices.CharGroupColor.CharGroupColor; colorText #mesquite.charMatrices.NoColor.NoColor; setBackground White; toggleShowNames on; toggleShowTaxonNames on; toggleTight off; toggleThinRows off; toggleShowChanges on; toggleSeparateLines off; toggleShowStates on; toggleAutoWCharNames on; toggleAutoTaxonNames off; toggleShowDefaultCharNames off; toggleConstrainCW on; toggleBirdsEye off; toggleShowPaleGrid off; toggleShowPaleCellColors off; toggleShowPaleExcluded off; togglePaleInapplicable on; toggleShowBoldCellText off; toggleAllowAutosize on; toggleColorsPanel off; toggleDiagonal on; setDiagonalHeight 80; toggleLinkedScrolling on; toggleScrollLinkedTables off; endTell; showWindow; getWindow; tell It; forceAutosize; endTell; getEmployee #mesquite.charMatrices.AlterData.AlterData; tell It; toggleBySubmenus off; endTell; getEmployee #mesquite.charMatrices.ColorByState.ColorByState; tell It; setStateLimit 9; toggleUniformMaximum on; endTell; getEmployee #mesquite.charMatrices.ColorCells.ColorCells; tell It; setColor Red; removeColor off; endTell; getEmployee #mesquite.categ.StateNamesStrip.StateNamesStrip; tell It; showStrip off; endTell; getEmployee #mesquite.charMatrices.AnnotPanel.AnnotPanel; tell It; togglePanel off; endTell; getEmployee #mesquite.charMatrices.CharReferenceStrip.CharReferenceStrip; tell It; showStrip off; endTell; getEmployee #mesquite.charMatrices.QuickKeySelector.QuickKeySelector; tell It; autotabOff; endTell; getEmployee #mesquite.charMatrices.SelSummaryStrip.SelSummaryStrip; tell It; showStrip off; endTell; getEmployee #mesquite.categ.SmallStateNamesEditor.SmallStateNamesEditor; tell It; panelOpen true; endTell; endTell; endTell; endTell; end;