Systematic and phylogenetic Methods and Tables S1-S5 from Congruence, fossils and the evolutionary tree of rodents and lagomorphs

Details on systematic and phylogenetic methods and Table S1 (optimal Bayesian partition scheme), Table S2 (proportion shared quartets for subsampled DNA+indel+morphology datasets), Table S3 (summary of optimal MP topologies), Table S4 (summary of burnin values and indices of convergence for our Bayesian analyses), and Table S5 (R script to calculate tree similarity using Quartet package).