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Figure S1. Alpha-amylase and agarase models.; Figure S2. Growth curves of the sli-fkbp mutant and Sli-FKBP overproducer strains overexpressing amlB and dagA.; Figure S3. Agarase sequence coverage obtained by nano LC-MS/MS Triple TOF analysis.; Figure S4. Predicted models of agarase. from Functional identification of a Streptomyces lividans FKBP-like protein involved in the folding of overproduced secreted proteins.

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Version 2 2020-10-15, 12:51
Version 1 2019-10-11, 16:18
journal contribution
posted on 2019-10-25, 07:52 authored by R. L. Vicente, S. Marín, J. R. Valverde, C. Palomino, R. P. Mellado, S. Gullón
(A) Left: model of mature alpha-amylase with Pro350 residue in cis conformation. Right, model of immature amylase with P350 in trans conformation. The alpha-amylase Pro350 residue has been coloured in red and indicated by a red arrow. The active site is indicated by a green arrow. The cis-isomerisation of the Pro residue favours the enzyme to acquire its active conformation. (B) Left: model of mature agarase with P127 and P183 in cis conformation. Right: model of immature agarase with P127 and P183 in trans conformation. Prolines P127 and P183 are shown in red and indicated by red arrows, the active site has been coloured cyan, and the allosteric site in magenta. The models were produced using I- TASSER (alpha-amylase) or Raptor-X (agarase) and UCSF chimera, and optimized with the Amber force field. ;Time course of the S. lividans TK21(pAMI11) and S.lividans ∆sli-fkbp (pAMI11) (a) S. lividans TK21(pAGAs5) and S.lividans ∆sli-fkbp (pAGAs5) (b) S.lividans TK21(pAMI11) (pFDT) and S.lividans TK21(pAMI11) (pFDTFKBP) (c) S.lividans TK21(pAGAs5) (pFDT) and S.lividans TK21(pAGAs5) (pFDTFKBP) (d).;Band corresponding to the protein with a faster mobility when Sli-FKBP was overproduced respect to the wild type was sliced out of the gel and subject to trypsin digestion and analysed by nano LC-MS/MS Triple Tof. Sequences from the mature agarase in bold were identified in the experiment. Yellow letters indicate catalytic residues. ;Top row, left to right: A, mature agarase with both P127 and P183 in cis conformation. B, agarase with P127 in trans and P183 in cis conformation. C, agarase with both P127 and P183 in trans conformation. All the structures are shown using the same orientation to show the conservation of the active site in the P127trans, P183cis conformation. In the lower row we have superposed agarose bound to the active site (green) and the allosteric processive site (red) to illustrate the suggested disruption of the allosteric site in both trans conformations (B, C) and of the active site in the double trans conformer (C).

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