Code files from Detection of HIV transmission clusters from phylogenetic trees using a multi-state birth–death model Joëlle Barido-Sottani Timothy G. Vaughan Tanja Stadler 10.6084/m9.figshare.6993662.v1 https://rs.figshare.com/articles/dataset/Code_files_from_Detection_of_HIV_transmission_clusters_from_phylogenetic_trees_using_a_multi-state_birth_death_model/6993662 R scripts used for analysis and plotting 2018-08-22 09:35:11 phylodynamics multi-state birth–death model transmission clusters maximumlikelihood